Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Transducin/WD40 repeat-like superfamily protein
Primary source: TAIR:AT3G49400
Locus tag: AT3G49400
See related: Araport:AT3G49400
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 16

Sequence:: Chromosome: 3; NC_003074.8 (18319060..18324624, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001203111.1

Supported by ESTs:

NM_001339410.1

Supported by ESTs:

NM_001339411.1

Supported by ESTs:

NM_114800.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables histone acetyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in transcription initiation at RNA polymerase III promoter	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
part_of transcription factor TFIIIC complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Transducin/WD40 repeat-like superfamily protein

NP_001190040.1

Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781).

NP_190509.2

Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 959 Blast hits to 868 proteins in 197 species: Archae - 0; Bacteria - 241; Metazoa - 222; Fungi - 181; Plants - 154; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

18319060..18324624 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_114800.3 → NP_190509.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190509.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XJD5, A0A654FED9, F4IXX3

Conserved Domains (4) summary

COG2319
Location:280 → 465

WD40; WD40 repeat [General function prediction only]

pfam12657
Location:15 → 161

TFIIIC_delta; Transcription factor IIIC subunit delta N-term

sd00039
Location:327 → 382

7WD40; WD40 repeat [structural motif]

cl02567
Location:275 → 463

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
NM_001339410.1 → NP_001327047.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LR42, A0A5S9XJD5, A0A654FED9
NM_001339411.1 → NP_001327046.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LR41
NM_001203111.1 → NP_001190040.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190040.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XJD5, A0A654FED9, F4IXX2

Conserved Domains (3) summary

pfam12657
Location:15 → 161

TFIIIC_delta; Transcription factor IIIC subunit delta N-term

sd00039
Location:327 → 382

7WD40; WD40 repeat [structural motif]

cl02567
Location:256 → 357

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...