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    YLS2 Calcium-dependent phosphotriesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824306, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YLS2
    Official Full Name
    Calcium-dependent phosphotriesterase superfamily protein
    Primary source
    TAIR:AT3G51430
    Locus tag
    AT3G51430
    See related
    Araport:AT3G51430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SSL5; STRICTOSIDINE SYNTHASE-LIKE 5; YELLOW-LEAF-SPECIFIC GENE 2
    Summary
    Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
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    Genomic context

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    See YLS2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19086344..19088150)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF241) Neighboring gene strictosidine synthase-like 4 Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene Calcium-dependent phosphotriesterase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203124.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT enables strictosidine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to virus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Calcium-dependent phosphotriesterase superfamily protein
    NP_001190053.1
    • YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1).
    NP_566951.1
    • YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, alkaloid biosynthetic process, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1); Has 1475 Blast hits to 1462 proteins in 362 species: Archae - 36; Bacteria - 561; Metazoa - 225; Fungi - 12; Plants - 456; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19086344..19088150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115002.4 → NP_566951.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566951.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAZ7, Q9SD06
      UniProtKB/TrEMBL
      A0A178VMI5, A0A5S9XJT8
      Conserved Domains (2) summary
      COG3386
      Location:70 → 299
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      pfam03088
      Location:161 → 248
      Str_synth; Strictosidine synthase

    2. NM_001203124.1 → NP_001190053.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190053.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J3D0
      Conserved Domains (5) summary
      COG3386
      Location:70 → 297
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cd05819
      Location:70 → 114
      NHL; NHL repeat [structural motif]
      pfam03088
      Location:161 → 248
      Str_synth; Strictosidine synthase
      cl08224
      Location:250 → 354
      PsaA_PsaB; Photosystem I psaA/psaB protein
      cl18310
      Location:67 → 193
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAZ7.1

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