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    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830540, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    Primary source
    TAIR:AT5G06520
    Locus tag
    AT5G06520
    See related
    Araport:AT5G06520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M7.5; F15M7_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (1987181..1989372, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 96 Neighboring gene nuclear factor Y, subunit A10 Neighboring gene ABC-2 type transporter family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    NP_196270.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1987181..1989372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120735.2 → NP_196270.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196270.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM43, A0A5S9Y1X5, Q9FG18
      Conserved Domains (3) summary
      smart00648
      Location:402 → 454
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam01805
      Location:489 → 540
      Surp; Surp module
      cl00155
      Location:647 → 679
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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