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    U3 ribonucleoprotein (Utp) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830761, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U3 ribonucleoprotein (Utp) family protein
    Primary source
    TAIR:AT5G08600
    Locus tag
    AT5G08600
    See related
    Araport:AT5G08600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAH20.16; MAH20_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (2786177..2790241)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pyruvate kinase family protein Neighboring gene Calcium-binding EF hand family protein Neighboring gene SNF1-related protein kinase 2.1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203336.1
    NM_120947.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    U3 ribonucleoprotein (Utp) family protein
    NP_001190265.1
    • U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).
    NP_196477.1
    • U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2786177..2790241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343023.1 → NP_001331282.1  U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDG3

    2. NM_120947.3 → NP_196477.1  U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN07, Q9FNM8
      Conserved Domains (1) summary
      pfam04615
      Location:110 → 797
      Utp14; Utp14 protein

    3. NM_001203336.1 → NP_001190265.1  U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190265.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM26, F4KB50
      Conserved Domains (1) summary
      pfam04615
      Location:123 → 810
      Utp14; Utp14 protein
    Nucleotide Protein
    Heading Accession and Version

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