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    carboxyl-terminal peptidase (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831964, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal peptidase (DUF239)
    Primary source
    TAIR:AT5G18460
    Locus tag
    AT5G18460
    See related
    Araport:AT5G18460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20L16.180; F20L16_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6122725..6126742)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GATA zinc finger protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Curculin-like (mannose-binding) lectin family protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121851.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal peptidase (DUF239)
    NP_197347.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6122725..6126742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121851.4 → NP_197347.1  carboxyl-terminal peptidase (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197347.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URK2, A0A7G2FFH6, Q8LFH3
      Conserved Domains (2) summary
      pfam03080
      Location:200 → 423
      Neprosin
      pfam14365
      Location:64 → 186
      Neprosin_AP; Neprosin activation peptide
    Nucleotide Protein
    Heading Accession and Version

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