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    phosphatidylinositol-glycan biosynthesis class X-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834729, updated on 18-Sep-2024

    Summary

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    Official Full Name
    phosphatidylinositol-glycan biosynthesis class X-like protein
    Primary source
    TAIR:AT5G46850
    Locus tag
    AT5G46850
    See related
    Araport:AT5G46850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSD23.3; MSD23_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (19010608..19012038)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Putative membrane lipoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203553.2
    NM_124056.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol-glycan biosynthesis class X-like protein
    NP_001190481.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233).
    NP_001190482.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233).
    NP_199497.1
    • unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19010608..19012038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203552.1 → NP_001190481.1  phosphatidylinositol-glycan biosynthesis class X-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190481.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FH95, F4KIV8
      Conserved Domains (1) summary
      cl08475
      Location:128 → 309
      PIG-X; PIG-X / PBN1

    2. NM_124056.2 → NP_199497.1  phosphatidylinositol-glycan biosynthesis class X-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199497.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FH95, Q9LUK5
      Conserved Domains (1) summary
      cl08475
      Location:99 → 280
      PIG-X; PIG-X / PBN1

    3. NM_001203553.2 → NP_001190482.1  phosphatidylinositol-glycan biosynthesis class X-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190482.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G8L5, A0A7G2FH95, F4KIW0
      Conserved Domains (1) summary
      cl08475
      Location:102 → 283
      PIG-X; PIG-X / PBN1
    Nucleotide Protein
    Heading Accession and Version

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