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    HCP-like superfamily protein with MYND-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835113, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HCP-like superfamily protein with MYND-type zinc finger
    Primary source
    TAIR:AT5G50450
    Locus tag
    AT5G50450
    See related
    Araport:AT5G50450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXI22.17; MXI22_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (20543225..20544857, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene membrin 12 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene secE/sec61-gamma protein transport protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124427.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HCP-like superfamily protein with MYND-type zinc finger
    NP_199856.1
    • HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT1G67340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20543225..20544857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124427.4 → NP_199856.1  HCP-like superfamily protein with MYND-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199856.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK27
      UniProtKB/TrEMBL
      A0A5S9YCU9
      Conserved Domains (4) summary
      COG0790
      Location:95 → 204
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:115 → 144
      SLR; SLR repeat [structural motif]
      pfam01753
      Location:261 → 305
      zf-MYND; MYND finger
      pfam08238
      Location:171 → 201
      Sel1; Sel1 repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK27.1

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