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    RNase H family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835181, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNase H family protein
    Primary source
    TAIR:AT5G51080
    Locus tag
    AT5G51080
    See related
    Araport:AT5G51080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MWD22.2; MWD22_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (20768795..20771085, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NADPH/respiratory burst oxidase protein D Neighboring gene Clp ATPase Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNase H1 Cooperates with DNA Gyrases to Restrict R-Loops and Maintain Genome Integrity in Arabidopsis Chloroplasts. Yang Z, et al. Plant Cell, 2017 Oct. PMID 28939594, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036976.3
    NM_001036977.2
    NM_124487.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNase H family protein
    NP_001032053.1
    • RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 2874 Blast hits to 2867 proteins in 550 species: Archae - 74; Bacteria - 1112; Metazoa - 4; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).
    NP_001032054.1
    • RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 2888 Blast hits to 2881 proteins in 553 species: Archae - 74; Bacteria - 1122; Metazoa - 4; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
    NP_199921.2
    • RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 2876 Blast hits to 2869 proteins in 551 species: Archae - 74; Bacteria - 1114; Metazoa - 4; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20768795..20771085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036977.2 → NP_001032054.1  RNase H family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032054.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DH76
      Conserved Domains (1) summary
      cd09279
      Location:123 → 250
      RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI

    2. NM_001036976.3 → NP_001032053.1  RNase H family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032053.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCZ3, A0A654GAF5, Q84TE0
      Conserved Domains (1) summary
      cd09279
      Location:186 → 313
      RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI

    3. NM_124487.3 → NP_199921.2  RNase H family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199921.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCZ3, A0A654GAF5, Q84TE0
      Conserved Domains (1) summary
      cd09279
      Location:186 → 313
      RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI
    Nucleotide Protein
    Heading Accession and Version

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