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    LHCB3 light-harvesting chlorophyll B-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835515, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LHCB3
    Official Full Name
    light-harvesting chlorophyll B-binding protein 3
    Primary source
    TAIR:AT5G54270
    Locus tag
    AT5G54270
    See related
    Araport:AT5G54270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LHCB3*1; light-harvesting chlorophyll B-binding protein 3; MDK4.9; MDK4_9
    Summary
    Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
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    Genomic context

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    See LHCB3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22038165..22039568)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated cation channel 4 Neighboring gene DNA repair and meiosis protein (Mre11) Neighboring gene myosin 2 Neighboring gene cytochrome c biogenesis protein family Neighboring gene cotton fiber-like protein (DUF761) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Lhcb1/Lhcb2/Lhcb3 heterotrimers of the main light-harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II). Jackowski G, et al. Biochim Biophys Acta, 2001 Apr 2. PMID 11245797
    2. Phytotoxicity of chiral herbicide bromacil: Enantioselectivity of photosynthesis in Arabidopsis thaliana. Chen Z, et al. Sci Total Environ, 2016 Apr 1. PMID 26802342
    3. Excitation energy transfer and charge separation are affected in Arabidopsis thaliana mutants lacking light-harvesting chlorophyll a/b binding protein Lhcb3. Adamiec M, et al. J Photochem Photobiol B, 2015 Dec. PMID 26562806
    4. The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis. Damkjaer JT, et al. Plant Cell, 2009 Oct. PMID 19880802, Free PMC Article
    5. High-light vs. low-light: effect of light acclimation on photosystem II composition and organization in Arabidopsis thaliana. Kouřil R, et al. Biochim Biophys Acta, 2013 Mar. PMID 23274453

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Towards spruce-type photosystem II: consequences of the loss of light-harvesting proteins LHCB3 and LHCB6 in Arabidopsis.
      Title: Towards spruce-type photosystem II: consequences of the loss of light-harvesting proteins LHCB3 and LHCB6 in Arabidopsis.
    2. The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis.
      Title: The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124807.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in photosynthesis, light harvesting in photosystem II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of stomatal movement IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to herbicide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PSII associated light-harvesting complex II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    light-harvesting chlorophyll B-binding protein 3
    NP_200238.1
    • light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22038165..22039568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124807.4 → NP_200238.1  light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200238.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z239, Q42016, Q9S7M0
      UniProtKB/TrEMBL
      A0A178USW4, A0A5S9YDV5
      Conserved Domains (1) summary
      PLN00025
      Location:9 → 265
      PLN00025; photosystem II light harvesting chlorophyll a/b binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7M0.1

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