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    Chalcone-flavanone isomerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836755, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Chalcone-flavanone isomerase family protein
    Primary source
    TAIR:AT5G66230
    Locus tag
    AT5G66230
    See related
    Araport:AT5G66230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K2A18.31; K2A18_31
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (26461152..26464171)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ferredoxin-NADP[+]-oxidoreductase 1 Neighboring gene armadillo repeat only 2 Neighboring gene calcium-dependent protein kinase 28 Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene miscRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126021.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Chalcone-flavanone isomerase family protein
    NP_001190632.1
    • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
    NP_201424.1
    • Chalcone-flavanone isomerase family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26461152..26464171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203703.1 → NP_001190632.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190632.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GEK4, F4JZ53
      Conserved Domains (1) summary
      pfam02431
      Location:11 → 205
      Chalcone; Chalcone-flavanone isomerase

    2. NM_126021.4 → NP_201424.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201424.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FJ64, Q9FH65
    Nucleotide Protein
    Heading Accession and Version

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