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    RRC1 RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832577, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RRC1
    Official Full Name
    RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT5G25060
    Locus tag
    AT5G25060
    See related
    Araport:AT5G25060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    reduced red-light responses in cry1cry2 background 1; T11H3.70; T11H3_70
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    Genomic context

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    See RRC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (8633114..8640217, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Major facilitator superfamily protein Neighboring gene neurofilament light protein Neighboring gene Sas10/Utp3/C1D family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm. Kim H, et al. New Phytol, 2023 Apr. PMID 36651061
    2. Deletion of the RS domain of RRC1 impairs phytochrome B signaling in Arabidopsis. Shikata H, et al. Plant Signal Behav, 2012 Aug. PMID 22751357, Free PMC Article
    3. The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction. Shikata H, et al. Plant J, 2012 Jun. PMID 22324426
    4. SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis. Kathare PK, et al. Proc Natl Acad Sci U S A, 2022 Nov. PMID 36282917, Free PMC Article
    5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm.
      Title: Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm.
    2. Deletion of the RS domain of RRC1 reduces phyB signaling, probably due to aberrant regulation of alternative splicing of target genes. [RRC1]
      Title: Deletion of the RS domain of RRC1 impairs phytochrome B signaling in Arabidopsis.
    3. Deletion of the RS domain of RRC1 (reduced red-light responses in cry1cry2 background 1), reduces phytochrome B-mediated light responses in a phytochrome B-dependent manner.
      Title: The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122415.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA recognition motif (RRM)-containing protein
    NP_568464.1
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942), SWAP/Surp (InterPro:IPR000061), DNA-binding SAP (InterPro:IPR003034), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G10800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8633114..8640217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122415.2 → NP_568464.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568464.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5J3
      UniProtKB/TrEMBL
      A0A178UL94, A0A5S9Y794
      Conserved Domains (4) summary
      pfam01805
      Location:329 → 379
      Surp; Surp module
      cd12223
      Location:178 → 261
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21371
      Location:791 → 840
      cwf21_RRC1-like; cwf21 domain found in Arabidopsis thaliana protein RRC1 and similar proteins
      cl02544
      Location:444 → 579
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5J3.1

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