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    LHCB4.3 light harvesting complex photosystem II [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818599, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LHCB4.3
    Official Full Name
    light harvesting complex photosystem II
    Primary source
    TAIR:AT2G40100
    Locus tag
    AT2G40100
    See related
    Araport:AT2G40100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27I1.2; F27I1_2; light harvesting complex photosystem II
    Summary
    Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II
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    Genomic context

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    See LHCB4.3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16745628..16747424)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ABC2 homolog 9 Neighboring gene Alpha/beta hydrolase related protein Neighboring gene Yippee family putative zinc-binding protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection. de Bianchi S, et al. Plant Cell, 2011 Jul. PMID 21803939, Free PMC Article
    2. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    3. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    4. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest that Lhcb4.1-.3 is unique among photosystem II antenna proteins and determinant for photosystem II macro-organization and photoprotection.
      Title: Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202790.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    light harvesting complex photosystem II
    NP_001189719.1
    • light harvesting complex photosystem II (LHCB4.3); CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2).
    NP_181539.1
    • light harvesting complex photosystem II (LHCB4.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2254 Blast hits to 2193 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1937; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16745628..16747424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129568.3 → NP_181539.1  light harvesting complex photosystem II [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181539.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9J2, Q9S7W1
      UniProtKB/TrEMBL
      A0A178VTY4, A0A5S9X5L3
      Conserved Domains (1) summary
      PLN00187
      Location:10 → 273
      PLN00187; photosystem II light-harvesting complex II protein Lhcb4; Provisional

    2. NM_001202790.1 → NP_001189719.1  light harvesting complex photosystem II [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189719.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IGY6
      Conserved Domains (1) summary
      cl02879
      Location:10 → 173
      Chloroa_b-bind; Chlorophyll A-B binding protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7W1.1

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