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    pEARLI4 phospholipase-like protein (PEARLI 4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816630, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pEARLI4
    Official Full Name
    phospholipase-like protein (PEARLI 4) family protein
    Primary source
    TAIR:AT2G20960
    Locus tag
    AT2G20960
    See related
    Araport:AT2G20960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26H11.28; F26H11_28
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    Genomic context

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    See pEARLI4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (9006610..9009794)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SNARE-like superfamily protein Neighboring gene transmembrane protein, putative (DUF1279) Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene lipid-binding protein Neighboring gene minichromosome maintenance 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335730.1
    NM_127665.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase-like protein (PEARLI 4) family protein
    NP_179692.1
    • pEARLI4; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G38560.1); Has 15842 Blast hits to 10281 proteins in 873 species: Archae - 33; Bacteria - 1976; Metazoa - 6640; Fungi - 3309; Plants - 1166; Viruses - 359; Other Eukaryotes - 2359 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9006610..9009794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335728.1 → NP_001323931.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXB3, A0A1P8AYH5

    2. NM_001335729.1 → NP_001323932.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXB3, A0A1P8AYN4

    3. NM_127665.3 → NP_179692.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179692.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXB3, Q9SKR5
      Conserved Domains (2) summary
      pfam05278
      Location:435 → 745
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)
      pfam08618
      Location:175 → 302
      Opi1; Transcription factor Opi1

    4. NM_001335730.1 → NP_001323930.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXB3, Q9SKR5
    Nucleotide Protein
    Heading Accession and Version

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