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    UBA-like domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839338, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UBA-like domain protein
    Primary source
    TAIR:AT1G05040
    Locus tag
    AT1G05040
    See related
    Araport:AT1G05040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7A14.9; T7A14_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (1447369..1448463, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene general transcription factor II H2 Neighboring gene coiled-coil protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001123756.1
    NM_100383.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UBA-like domain protein
    NP_001117228.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_171997.1
    • BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1447369..1448463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100383.3 → NP_171997.1  UBA-like domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171997.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SNC4, A0ME56, Q9ZVN8
      Conserved Domains (1) summary
      cd14273
      Location:11 → 41
      UBA_TAP-C_like; UBA-like domain found in the NXF family of mRNA nuclear export factors and similar proteins

    2. NM_001123756.1 → NP_001117228.1  UBA-like domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117228.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKK2, B3H6T5
      Conserved Domains (2) summary
      cd14273
      Location:11 → 41
      UBA_TAP-C_like; UBA-like domain found in the NXF family of mRNA nuclear export factors and similar proteins
      pfam03028
      Location:5 → 88
      Dynein_heavy; Dynein heavy chain and region D6 of dynein motor
    Nucleotide Protein
    Heading Accession and Version

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