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    nucleic acid binding / zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816302, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleic acid binding / zinc ion binding protein
    Primary source
    TAIR:AT2G17920
    Locus tag
    AT2G17920
    See related
    Araport:AT2G17920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13L16.6; T13L16_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (7782712..7784287)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein Neighboring gene WEB family protein (DUF827)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127346.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleic acid binding / zinc ion binding protein
    NP_179382.2
    • nucleic acid binding;zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7782712..7784287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127346.2 → NP_179382.2  nucleic acid binding / zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179382.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6DR65, Q84RE2
      Conserved Domains (2) summary
      pfam14111
      Location:34 → 170
      DUF4283; Domain of unknown function (DUF4283)
      pfam14392
      Location:172 → 219
      zf-CCHC_4; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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