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    DNA double-strand break repair and VJ recombination XRCC4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842435, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA double-strand break repair and VJ recombination XRCC4
    Primary source
    TAIR:AT1G61410
    Locus tag
    AT1G61410
    See related
    Araport:AT1G61410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1F9.10; T1F9_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (22658552..22659552, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-locus lectin protein kinase family protein Neighboring gene S-locus lectin protein kinase family protein Neighboring gene CAP-gly domain linker Neighboring gene S-locus lectin protein kinase family protein Neighboring gene ncRNA Neighboring gene S-locus lectin protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104822.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA double-strand break repair and VJ recombination XRCC4
    NP_564776.1
    • DNA double-strand break repair and VJ recombination XRCC4; FUNCTIONS IN: DNA binding; INVOLVED IN: double-strand break repair, DNA recombination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751), DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585); BEST Arabidopsis thaliana protein match is: homolog of human DNA ligase iv-binding protein XRCC4 (TAIR:AT3G23100.2); Has 116 Blast hits to 116 proteins in 57 species: Archae - 0; Bacteria - 60; Metazoa - 15; Fungi - 3; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22658552..22659552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104822.3 → NP_564776.1  DNA double-strand break repair and VJ recombination XRCC4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJY7, Q058G5
      Conserved Domains (1) summary
      pfam06632
      Location:19 → 101
      XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4
    Nucleotide Protein
    Heading Accession and Version

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