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    EMB1135 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844273, updated on 18-Sep-2024

    Summary

    Official Symbol
    EMB1135
    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT1G79350
    Locus tag
    AT1G79350
    See related
    Araport:AT1G79350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1135; YUP8H12R.3; YUP8H12R_3
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    Genomic context

    See EMB1135 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    31
    Sequence:
    Chromosome: 1; NC_003070.9 (29844621..29853466, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene metacaspase 6 Neighboring gene miscRNA Neighboring gene metacaspase 5 Neighboring gene metacaspase 4 Neighboring gene organic cation/carnitine transporter 2 Neighboring gene cytochrome P450, family 79, subfamily C, polypeptide 1

    Interactions

    General gene information

    NM_106583.6

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_178053.4
    • embryo defective 1135 (EMB1135); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, LSD1-type (InterPro:IPR005735), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); Has 4247 Blast hits to 3784 proteins in 326 species: Archae - 2; Bacteria - 520; Metazoa - 2572; Fungi - 347; Plants - 469; Viruses - 36; Other Eukaryotes - 301 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29844621..29853466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106583.6 → NP_178053.4  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178053.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IF36, O64516
      UniProtKB/TrEMBL
      A0A5S9WVQ4, A0A654EQD9
      Conserved Domains (4) summary
      pfam00628
      Location:693 → 741
      PHD; PHD-finger
      pfam03993
      Location:739 → 791
      DUF349; Domain of Unknown Function (DUF349)
      pfam13871
      Location:782 → 1074
      Helicase_C_4; C-terminal domain on Strawberry notch homologue
      pfam13872
      Location:216 → 514
      AAA_34; P-loop containing NTP hydrolase pore-1
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