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    Papain family cysteine protease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816682, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Papain family cysteine protease
    Primary source
    TAIR:AT2G21430
    Locus tag
    AT2G21430
    See related
    Araport:AT2G21430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3K23.19; F3K23_19
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (9171872..9173490, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vacuolar proton ATPase A2 Neighboring gene IBR domain containing protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene chromatin remodeling 34 Neighboring gene SNF2 domain CLASSY-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RD19, an Arabidopsis cysteine protease required for RRS1-R-mediated resistance, is relocalized to the nucleus by the Ralstonia solanacearum PopP2 effector. Bernoux M, et al. Plant Cell, 2008 Aug. PMID 18708476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127715.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in lytic vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Papain family cysteine protease
    NP_565512.1
    • Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT4G39090.1); Has 7727 Blast hits to 7665 proteins in 722 species: Archae - 65; Bacteria - 238; Metazoa - 3256; Fungi - 4; Plants - 1824; Viruses - 140; Other Eukaryotes - 2200 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9171872..9173490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127715.4 → NP_565512.1  Papain family cysteine protease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565512.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P43295, Q058I7, Q680L1, Q9SJT5
      UniProtKB/TrEMBL
      A0A178VSI2, A0A5S9WZX6
      Conserved Domains (2) summary
      smart00848
      Location:48 → 103
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:132 → 356
      Peptidase_C1; Papain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P43295.2

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