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    Caleosin-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838933, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Caleosin-related family protein
    Primary source
    TAIR:AT1G23240
    Locus tag
    AT1G23240
    See related
    Araport:AT1G23240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26F24.33; F26F24_33
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8252702..8254637, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Dynein light chain type 1 family protein Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Caleosin-related family protein Neighboring gene MMS ZWEI homologue 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene families from the Arabidopsis thaliana pollen coat proteome. Mayfield JA, et al. Science, 2001 Jun 29. PMID 11431566
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001123867.1
    NM_001332595.1
    NM_102173.4
    NM_202163.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables plant seed peroxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Caleosin-related family protein
    NP_001117339.1
    • Caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_173738.2
    • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 342 Blast hits to 337 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 279; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_973892.1
    • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8252702..8254637 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102173.4 → NP_173738.2  Caleosin-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173738.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H7A9, F4I4P7, Q8LE27, Q9LR37
      UniProtKB/TrEMBL
      A0A178W1K0, A0A5S9VP94
      Conserved Domains (1) summary
      pfam05042
      Location:25 → 194
      Caleosin; Caleosin related protein

    2. NM_001332595.1 → NP_001320525.1  Caleosin-related family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN27

    3. NM_001123867.1 → NP_001117339.1  Caleosin-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117339.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H7A9
      Conserved Domains (1) summary
      pfam05042
      Location:1 → 167
      Caleosin; Caleosin related protein

    4. NM_202163.2 → NP_973892.1  Caleosin-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973892.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H7A9
      Conserved Domains (1) summary
      pfam05042
      Location:34 → 165
      Caleosin; Caleosin related protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B3H7A9.1

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