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    SDS Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838040, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDS
    Official Full Name
    Cyclin family protein
    Primary source
    TAIR:AT1G14750
    Locus tag
    AT1G14750
    See related
    Araport:AT1G14750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10B6.15; F10B6_15; SOLO DANCERS
    Summary
    Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.
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    Genomic context

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    See SDS in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5079226..5082536, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene class I heat shock protein, putative (DUF1423) Neighboring gene S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family Neighboring gene KNOX meinox protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Arabidopsis meiotic cyclins reveals functional diversification among plant cyclin genes. Bulankova P, et al. PLoS Genet, 2013 May. PMID 23671425, Free PMC Article
    2. A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. De Muyt A, et al. PLoS Genet, 2009 Sep. PMID 19763177, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001084070.2
    NM_001332135.1
    NM_001332136.1
    NM_101344.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within double-strand break repair via homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclin family protein
    NP_001077539.1
    • SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3409 Blast hits to 3403 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 1595; Fungi - 422; Plants - 957; Viruses - 3; Other Eukaryotes - 432 (source: NCBI BLink).
    NP_172928.2
    • SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0; Bacteria - 40; Metazoa - 1630; Fungi - 464; Plants - 953; Viruses - 3; Other Eukaryotes - 451 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5079226..5082536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101344.3 → NP_172928.2  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172928.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFW3, Q8RYC7, Q9LQV6
      UniProtKB/TrEMBL
      A0A178W021, A0A5S9UFE7, A0A654EBG8, A0A7G2DVH5
      Conserved Domains (2) summary
      cd20721
      Location:488 → 578
      CYCLIN_SDS-like_rpt2; second cyclin box found in Arabidopsis thaliana cyclin-SDS and similar proteins
      cl40454
      Location:347 → 483
      CYCLIN_SF; Cyclin box fold superfamily

    2. NM_001332135.1 → NP_001322548.1  Cyclin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUB6, A0A654EBG8, A0A7G2DVH5

    3. NM_001084070.2 → NP_001077539.1  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077539.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFW3
      Conserved Domains (2) summary
      cd00043
      Location:320 → 404
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
      pfam00134
      Location:184 → 316
      Cyclin_N; Cyclin, N-terminal domain

    4. NM_001332136.1 → NP_001322547.1  Cyclin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUC8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PFW3.2

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