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    SAT32 interferon-related developmental regulator family protein / IFRD protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839669, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SAT32
    Official Full Name
    interferon-related developmental regulator family protein / IFRD protein family
    Primary source
    TAIR:AT1G27760
    Locus tag
    AT1G27760
    See related
    Araport:AT1G27760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSAT32; SALT-TOLERANCE 32; T22C5.22; T22C5_22
    Summary
    Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.
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    Genomic context

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    See SAT32 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (9668508..9671657)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nucleic acid binding protein Neighboring gene Ubiquitin system component Cue protein Neighboring gene autoinhibited Ca2+-ATPase 1 Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and functional characterization of the Arabidopsis salt-tolerance 32 (AtSAT32) gene associated with salt tolerance and ABA signaling. Park MY, et al. Physiol Plant, 2009 Apr. PMID 19210750
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtSAT32 is involved in both salinity tolerance and abscisic acid signaling as a positive regulator.
      Title: Isolation and functional characterization of the Arabidopsis salt-tolerance 32 (AtSAT32) gene associated with salt tolerance and ABA signaling.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_102541.3
    NM_179384.2
    NM_202194.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    interferon-related developmental regulator family protein / IFRD protein family
    NP_564294.1
    • SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 353 Blast hits to 353 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 99; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    NP_849715.2
    • SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973923.1
    • SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9668508..9671657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202194.3 → NP_973923.1  interferon-related developmental regulator family protein / IFRD protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973923.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAC4, A0A654EF47, F4HUS5
      Conserved Domains (2) summary
      pfam04836
      Location:376 → 426
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:38 → 331
      IFRD; Interferon-related developmental regulator (IFRD)

    2. NM_102541.3 → NP_564294.1  interferon-related developmental regulator family protein / IFRD protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564294.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EF47, Q9ASX8
      Conserved Domains (2) summary
      pfam04836
      Location:372 → 422
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:39 → 326
      IFRD; Interferon-related developmental regulator (IFRD)

    3. NM_179384.2 → NP_849715.2  interferon-related developmental regulator family protein / IFRD protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849715.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EF47, F4HUS7
      Conserved Domains (2) summary
      pfam04836
      Location:361 → 411
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:28 → 315
      IFRD; Interferon-related developmental regulator (IFRD)
    Nucleotide Protein
    Heading Accession and Version

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