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    RBP47A RNA-binding protein 47A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841384, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBP47A
    Official Full Name
    RNA-binding protein 47A
    Primary source
    TAIR:AT1G49600
    Locus tag
    AT1G49600
    See related
    Araport:AT1G49600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBP47A; F14J22.16; F14J22_16; RNA-binding protein 47A
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    Genomic context

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    See RBP47A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (18356799..18360447, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-dependent protein kinase (CDPK) family protein Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene F-box family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction with Cu²⁺ disrupts the RNA binding affinities of RNA recognition motif containing protein. Qin X, et al. Biochem Biophys Res Commun, 2014 Feb 7. PMID 24434156
    2. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
    3. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that the RNA binding activities of recombinant AtRBP45A and AtRBP47A were impaired in the presence of Cu(2+).
      Title: Interaction with Cu²⁺ disrupts the RNA binding affinities of RNA recognition motif containing protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333393.1
    NM_103848.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables poly(A) binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 47A
    NP_175383.1
    • RNA-binding protein 47A (RBP47A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47B (TAIR:AT3G19130.1); Has 46260 Blast hits to 24920 proteins in 980 species: Archae - 10; Bacteria - 2612; Metazoa - 22234; Fungi - 5462; Plants - 7399; Viruses - 56; Other Eukaryotes - 8487 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18356799..18360447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333392.1 → NP_001321910.1  RNA-binding protein 47A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASD0, A0A654EH41

    2. NM_103848.3 → NP_175383.1  RNA-binding protein 47A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175383.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I3B3, Q9FX88
      UniProtKB/TrEMBL
      A0A178WAQ6, A0A5S9WN12
      Conserved Domains (3) summary
      cd12344
      Location:120 → 200
      RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:212 → 291
      RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cl17169
      Location:326 → 397
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_001333393.1 → NP_001321909.1  RNA-binding protein 47A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASD0, A0A654EH41
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I3B3.1

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