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    HB31 homeobox protein 31 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838006, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HB31
    Official Full Name
    homeobox protein 31
    Primary source
    TAIR:AT1G14440
    Locus tag
    AT1G14440
    See related
    Araport:AT1G14440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtHB31; F14L17.21; F14L17_21; FLORAL TRANSITION AT THE MERISTEM2; FTM2; homeobox protein 31; ZHD4; ZINC FINGER HOMEODOMAIN 4
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    Genomic context

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    See HB31 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4938754..4941332, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectate lyase family protein Neighboring gene glyoxal oxidase-related protein Neighboring gene NADH dehydrogenase (ubiquinone)s Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and a leucine-rich repeat protein that promotes flowering. Torti S, et al. Plant Cell, 2012 Feb. PMID 22319055, Free PMC Article
    2. The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. Tan QK, et al. Plant Physiol, 2006 Mar. PMID 16428600, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101311.6
    NM_202097.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in long-day photoperiodism, flowering IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    homeobox protein 31
    NP_172896.1
    • homeobox protein 31 (HB31); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1); Has 602 Blast hits to 562 proteins in 67 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 505; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    NP_973826.1
    • homeobox protein 31 (HB31); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4938754..4941332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101311.6 → NP_172896.1  homeobox protein 31 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172896.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9S0
      UniProtKB/TrEMBL
      A0A178W768, A0A5S9UFW1
      Conserved Domains (2) summary
      TIGR01565
      Location:218 → 274
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:88 → 141
      ZF-HD_dimer; ZF-HD protein dimerization region

    2. NM_202097.1 → NP_973826.1  homeobox protein 31 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973826.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9S0
      UniProtKB/TrEMBL
      A0A178W768, A0A5S9UFW1
      Conserved Domains (2) summary
      TIGR01565
      Location:218 → 274
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:88 → 141
      ZF-HD_dimer; ZF-HD protein dimerization region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9S0.1

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