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    ATMPK13 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837303, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATMPK13
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT1G07880
    Locus tag
    AT1G07880
    See related
    Araport:AT1G07880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24B9.3; F24B9_3
    Summary
    member of MAP Kinase
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    Genomic context

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    See ATMPK13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (2433896..2435858, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Sas10/Utp3/C1D family Neighboring gene transferring glycosyl group transferase (DUF604) Neighboring gene Protein kinase superfamily protein Neighboring gene Serine/Threonine-kinase RLCKVII protein Neighboring gene uncharacterized protein Neighboring gene ascorbate peroxidase 1 Neighboring gene LOB domain-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis. Zeng Q, et al. Plant Signal Behav, 2011 Oct. PMID 21904115, Free PMC Article
    2. The Arabidopsis thaliana MEK AtMKK6 activates the MAP kinase AtMPK13. Melikant B, et al. FEBS Lett, 2004 Oct 8. PMID 15474000
    3. HINKEL kinesin, ANP MAPKKKs and MKK6/ANQ MAPKK, which phosphorylates and activates MPK4 MAPK, constitute a pathway that is required for cytokinesis in Arabidopsis thaliana. Takahashi Y, et al. Plant Cell Physiol, 2010 Oct. PMID 20802223, Free PMC Article
    4. AtMPK4 is required for male-specific meiotic cytokinesis in Arabidopsis. Zeng Q, et al. Plant J, 2011 Sep. PMID 21575092
    5. Mapping out the roles of MAP kinases in plant defense. Innes RW. Trends Plant Sci, 2001 Sep. PMID 11544109

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtMKK6-AtMPK13 module positively regulates lateral root formation.[AtMPK13]
      Title: AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035913.2
    NM_100662.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables MAP kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_001030990.1
    • ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_172266.2
    • ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 5 (TAIR:AT4G11330.1); Has 121340 Blast hits to 120172 proteins in 4531 species: Archae - 84; Bacteria - 12928; Metazoa - 46067; Fungi - 12050; Plants - 29427; Viruses - 570; Other Eukaryotes - 20214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2433896..2435858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035913.2 → NP_001030990.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030990.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQQ9
      UniProtKB/TrEMBL
      A0A5S9T6E5, A0A654EIG6, A0A7G2DV70
      Conserved Domains (1) summary
      cd07858
      Location:26 → 362
      STKc_TEY_MAPK; Catalytic domain of the Serine/Threonine Kinases, Plant TEY Mitogen-Activated Protein Kinases

    2. NM_100662.4 → NP_172266.2  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172266.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WHV9
      Conserved Domains (1) summary
      cl21453
      Location:26 → 249
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQQ9.1

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