GLN1;5 glutamine synthetase 1;5 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GLN1;5
Official Full Name: glutamine synthetase 1;5
Primary source: TAIR:AT1G48470
Locus tag: AT1G48470
See related: Araport:AT1G48470
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: glutamine synthetase 1;5; T1N15.8; T1N15_8
Summary: Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.
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Genomic context

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See GLN1;5 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 10

Sequence:: Chromosome: 1; NC_003070.9 (17913711..17916101)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The significance of the two cytosolic glutamine synthetase enzymes, GLN1;3 and GLN1;5, in the context of seed development and germination in Arabidopsis thaliana.
Title: The significance of the two cytosolic glutamine synthetase enzymes, GLN1;3 and GLN1;5, in the context of seed development and germination in Arabidopsis thaliana.
AtPDF2.1 affects ammonium metabolism by regulating the expression of GLN1.3 and GLN1.5 through a yet unidentified mechanism.
Title: The plant defensin gene AtPDF2.1 mediates ammonium metabolism by regulating glutamine synthetase activity in Arabidopsis thaliana.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_103743.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables glutamine synthetase activity	IEA Inferred from Electronic Annotation more info
enables glutamine synthetase activity	NAS Non-traceable Author Statement more info

Process	Evidence Code	Pubs
involved_in glutamine biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: glutamine synthetase 1;5

NP_175280.1

glutamine synthetase 1;5 (GLN1;5); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: nitrogen compound metabolic process, glutamine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthetase 1.3 (TAIR:AT3G17820.1); Has 9330 Blast hits to 9326 proteins in 3052 species: Archae - 119; Bacteria - 4578; Metazoa - 411; Fungi - 235; Plants - 1748; Viruses - 3; Other Eukaryotes - 2236 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

17913711..17916101

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103743.3 → NP_175280.1 glutamine synthetase 1;5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175280.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GXW5, Q8LEA1, Q9LP78

UniProtKB/TrEMBL

A0A178WJ42

Conserved Domains (3) summary

PLN02284
Location:16 → 353

PLN02284; glutamine synthetase

pfam00120
Location:124 → 348

Gln-synt_C; Glutamine synthetase, catalytic domain

pfam03951
Location:22 → 97

Gln-synt_N; Glutamine synthetase, beta-Grasp domain