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    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837651, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    Primary source
    TAIR:AT1G11100
    Locus tag
    AT1G11100
    See related
    Araport:AT1G11100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FRG5; SNF2-RING-HELICASE?LIKE 5; T19D16.2; T19D16_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (3703672..3709586, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene serine carboxypeptidase-like 31 Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene LisH and RanBPM domains containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331954.1
    NM_001331955.1
    NM_001331956.1
    NM_100983.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    NP_001184958.1
    • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1).
    NP_172577.2
    • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99; Bacteria - 7103; Metazoa - 5587; Fungi - 5290; Plants - 2119; Viruses - 156; Other Eukaryotes - 3559 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3703672..3709586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198029.1 → NP_001184958.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184958.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLI9, F4I7D2
      Conserved Domains (4) summary
      smart00184
      Location:962 → 999
      RING; Ring finger
      pfam00176
      Location:544 → 925
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1115 → 1211
      Helicase_C; Helicase conserved C-terminal domain
      cl21455
      Location:623 → 686
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_100983.5 → NP_172577.2  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172577.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDW6, F4I7D3, O04082
      Conserved Domains (4) summary
      smart00184
      Location:919 → 956
      RING; Ring finger
      cd00046
      Location:565 → 751
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:545 → 882
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1072 → 1168
      Helicase_C; Helicase conserved C-terminal domain

    3. NM_001331955.1 → NP_001320184.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DRY0, C0SUU4

    4. NM_001331954.1 → NP_001320182.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM22, A0A7G2DSU9

    5. NM_001331956.1 → NP_001320183.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM17, A0A654EDW6
    Nucleotide Protein
    Heading Accession and Version

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