JAG C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: JAG
Official Full Name: C2H2 and C2HC zinc fingers superfamily protein
Primary source: TAIR:AT1G68480
Locus tag: AT1G68480
See related: Araport:AT1G68480
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: JAGGED; T26J14.5; T26J14_5
Summary: Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.
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Genomic context

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See JAG in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (25684314..25686195, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HAN physically interacts with JAG, and directly stimulates the expression of JAG and BOP2 to regulate floral organ development
Title: HANABA TARANU (HAN) Bridges Meristem and Organ Primordia Boundaries through PINHEAD, JAGGED, BLADE-ON-PETIOLE2 and CYTOKININ OXIDASE 3 during Flower Development in Arabidopsis.
JAG functions as a direct mediator between genes that control the identity of organs and tissues and the cellular activities required for organ growth.
Title: Arabidopsis JAGGED links floral organ patterning to tissue growth by repressing Kip-related cell cycle inhibitors.
JAG directly represses PTL, suggesting that the effect of JAG on the polarity field may be mediated by regulating auxin dynamics via PTL.
Title: JAGGED controls Arabidopsis petal growth and shape by interacting with a divergent polarity field.
JAG decouples cell cycle from cell growth during organ emergence. JAG promotes fast, anisotropic growth when floral organs emerge from the meristem and JAG directly represses meristem identity genes.
Title: JAGGED controls growth anisotropyand coordination between cell sizeand cell cycle during plant organogenesis.
A previously unrecognized fundamental regulation by which AS1, AS2, and JAG act to define sepal and petal from their boundaries is reported.
Title: Arabidopsis genes AS1, AS2, and JAG negatively regulate boundary-specifying genes to promote sepal and petal development.
JAG defines stamen and carpel shape.
Title: NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within abaxial cell fate specification	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within anther development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within carpel development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within flower development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within leaf morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of flower development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within specification of floral organ identity	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within stamen development	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: C2H2 and C2HC zinc fingers superfamily protein

NP_177015.3

JAGGED (JAG); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G13400.1); Has 723 Blast hits to 723 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 56; Fungi - 19; Plants - 626; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

25684314..25686195 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105519.4 → NP_177015.3 C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_177015.3

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6S591, Q9CA33

UniProtKB/TrEMBL

A0A5S9WQR7, A0A654EM49

Conserved Domains (1) summary

pfam13912
Location:50 → 76

zf-C2H2_6; C2H2-type zinc finger
NM_001334365.1 → NP_001323149.1 C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW66
NM_001334366.1 → NP_001323150.1 C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW85