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    senescence-associated family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842950, updated on 18-Sep-2024

    Summary

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    Official Full Name
    senescence-associated family protein
    Primary source
    TAIR:AT1G66330
    Locus tag
    AT1G66330
    See related
    Araport:AT1G66330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27F4.8; T27F4_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (24729629..24732575, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Signal transduction histidine kinase, hybrid-type, ethylene sensor Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ethylene response pathway is essential for ARABIDOPSIS A-FIFTEEN function in floral induction and leaf senescence. Chen GH, et al. Plant Signal Behav, 2012 Apr. PMID 22499170, Free PMC Article
    2. Role of ARABIDOPSIS A-FIFTEEN in regulating leaf senescence involves response to reactive oxygen species and is dependent on ETHYLENE INSENSITIVE2. Chen GH, et al. J Exp Bot, 2012 Jan. PMID 21940719, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A functional ethylene response is essential for AAF function in leaf senescence and floral induction.[AAF]
      Title: Ethylene response pathway is essential for ARABIDOPSIS A-FIFTEEN function in floral induction and leaf senescence.
    Submit: New GeneRIF Correction

    General gene information

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    NM_105304.2
    NM_202366.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within reactive oxygen species metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    senescence-associated family protein
    NP_564872.1
    • senescence-associated family protein; Has 54 Blast hits to 54 proteins in 21 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974095.1
    • senescence-associated family protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24729629..24732575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202366.3 → NP_974095.1  senescence-associated family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974095.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5K6K5, Q8LCA3, Q8VZ77, Q9C8Y4
      UniProtKB/TrEMBL
      A0A654ERL7, A0A7G2E0B3

    2. NM_105304.2 → NP_564872.1  senescence-associated family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564872.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5K6K5, Q8LCA3, Q8VZ77, Q9C8Y4
      UniProtKB/TrEMBL
      A0A654ERL7, A0A7G2E0B3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8Y4.1

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