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    Translation elongation factor EF1B/ribosomal protein S6 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821407, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation elongation factor EF1B/ribosomal protein S6 family protein
    Primary source
    TAIR:AT3G18760
    Locus tag
    AT3G18760
    See related
    Araport:AT3G18760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6457677..6459725, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene with no lysine (K) kinase 6 Neighboring gene Autophagy-related protein 13 Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084712.1
    NM_112762.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translation elongation factor EF1B/ribosomal protein S6 family protein
    NP_001078181.1
    • Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 42 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_566618.1
    • Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6457677..6459725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112762.3 → NP_566618.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566618.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGN2, A0A384KBE6, Q9LSA1
      Conserved Domains (1) summary
      cd15465
      Location:3 → 96
      bS6_mito; Mitochondrial Ribosomal Protein (MRP) S6

    2. NM_001084712.1 → NP_001078181.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078181.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRE5
      Conserved Domains (1) summary
      cd15465
      Location:3 → 91
      bS6_mito; Mitochondrial Ribosomal Protein (MRP) S6
    Nucleotide Protein
    Heading Accession and Version

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