U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CID9 CTC-interacting domain 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820668, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CID9
    Official Full Name
    CTC-interacting domain 9
    Primary source
    TAIR:AT3G14450
    Locus tag
    AT3G14450
    See related
    Araport:AT3G14450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 9
    Summary
    RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CID9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (4849539..4851678)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene GRIP/coiled-coil protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 3 Neighboring gene uncharacterized protein Neighboring gene LRR and NB-ARC domains-containing disease resistance protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_112305.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CTC-interacting domain 9
    NP_188063.1
    • CTC-interacting domain 9 (CID9); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 (TAIR:AT1G53650.2); Has 3508 Blast hits to 2820 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 1915; Fungi - 426; Plants - 863; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4849539..4851678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112305.2 → NP_188063.1  CTC-interacting domain 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188063.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRR6
      UniProtKB/TrEMBL
      A0A5S9XC41
      Conserved Domains (2) summary
      cd12459
      Location:139 → 218
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:234 → 315
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRR6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools