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    AP2/B3-like transcriptional factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3768753, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AP2/B3-like transcriptional factor family protein
    Primary source
    TAIR:AT3G19184
    Locus tag
    AT3G19184
    See related
    Araport:AT3G19184
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (6637347..6639278)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene presequence protease 1 Neighboring gene plastid division protein Neighboring gene autophagy 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035649.4
    NM_001338384.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AP2/B3-like transcriptional factor family protein
    NP_001030726.2
    • AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G42700.1); Has 304 Blast hits to 291 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6637347..6639278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035649.4 → NP_001030726.2  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030726.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1G3M3, Q9LJL1
      UniProtKB/TrEMBL
      A0A178VHQ0, A0A654F8N4
      Conserved Domains (2) summary
      cd10017
      Location:129 → 219
      B3_DNA; Plant-specific B3-DNA binding domain
      PTZ00482
      Location:221 → 277
      PTZ00482; membrane-attack complex/perforin (MACPF) Superfamily; Provisional

    2. NM_001338384.1 → NP_001326455.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPB7, A0A654F8N4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1G3M3.1

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