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    SWIB complex BAF60b domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821442, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB complex BAF60b domain-containing protein
    Primary source
    TAIR:AT3G19080
    Locus tag
    AT3G19080
    See related
    Araport:AT3G19080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6595344..6599089)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene F-box/RNI/FBD-like domain protein Neighboring gene RNA-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338380.1
    NM_112794.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    SWIB complex BAF60b domain-containing protein
    NP_188538.1
    • SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1); Has 4780 Blast hits to 2475 proteins in 346 species: Archae - 0; Bacteria - 702; Metazoa - 1207; Fungi - 636; Plants - 993; Viruses - 61; Other Eukaryotes - 1181 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6595344..6599089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338378.1 → NP_001327035.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR29, A0A5S9XDJ7
      Conserved Domains (4) summary
      PRK14724
      Location:345 → 423
      PRK14724; DNA topoisomerase III; Provisional
      cd10567
      Location:268 → 338
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
      pfam02201
      Location:386 → 423
      SWIB; SWIB/MDM2 domain
      pfam08766
      Location:2 → 55
      DEK_C; DEK C terminal domain

    2. NM_001338379.1 → NP_001327036.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7N9, A0A1I9LR28, A0A384KE98, A0A5S9XDJ7
      Conserved Domains (2) summary
      cd10567
      Location:268 → 338
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
      pfam08766
      Location:2 → 55
      DEK_C; DEK C terminal domain

    3. NM_112794.2 → NP_188538.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188538.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V682, A0A384KKH9, A0A5S9XDJ7, F4J9Z9
      Conserved Domains (2) summary
      pfam02201
      Location:266 → 338
      SWIB; SWIB/MDM2 domain
      pfam08766
      Location:4 → 55
      DEK_C; DEK C terminal domain

    4. NM_001338380.1 → NP_001327034.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7N9, A0A1I9LR28, A0A384KE98, A0A5S9XDJ7
      Conserved Domains (2) summary
      cd10567
      Location:268 → 338
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
      pfam08766
      Location:2 → 55
      DEK_C; DEK C terminal domain
    Nucleotide Protein
    Heading Accession and Version

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