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    emb2738 GTP-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820382, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb2738
    Official Full Name
    GTP-binding family protein
    Primary source
    TAIR:AT3G12080
    Locus tag
    AT3G12080
    See related
    Araport:AT3G12080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 2738
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    Genomic context

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    See emb2738 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (3847743..3852138)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Aha1 domain-containing protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene RAB geranylgeranyl transferase beta subunit 2 Neighboring gene tetraspanin6 Neighboring gene Cation efflux family protein Neighboring gene actin-11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EMB2738, which encodes a putative plastid-targeted GTP-binding protein, is essential for embryogenesis and chloroplast development in higher plants. Ye LS, et al. Physiol Plant, 2017 Nov. PMID 28675462
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. EMB2738 and NtEMB2738 are involved in the expression of plastid genes in higher plants.
      Title: EMB2738, which encodes a putative plastid-targeted GTP-binding protein, is essential for embryogenesis and chloroplast development in higher plants.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001084670.1
    NM_112042.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within plastid transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    GTP-binding family protein
    NP_001078139.1
    • embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink).
    NP_187815.2
    • embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46668 Blast hits to 25884 proteins in 2974 species: Archae - 250; Bacteria - 36183; Metazoa - 387; Fungi - 453; Plants - 421; Viruses - 0; Other Eukaryotes - 8974 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3847743..3852138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112042.4 → NP_187815.2  GTP-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187815.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIT5, A0A384LJ95, B5X565, Q9C7C0
      Conserved Domains (2) summary
      PRK00093
      Location:158 → 638
      PRK00093; GTP-binding protein Der; Reviewed
      cl38936
      Location:108 → 182
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001084670.1 → NP_001078139.1  GTP-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078139.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J8M2, Q9C7C0
      Conserved Domains (5) summary
      cd01894
      Location:162 → 350
      EngA1; EngA1 GTPase contains the first domain of EngA
      cd01895
      Location:371 → 544
      EngA2; EngA2 GTPase contains the second domain of EngA
      TIGR00231
      Location:368 → 538
      small_GTP; small GTP-binding protein domain
      pfam14714
      Location:552 → 586
      KH_dom-like; KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
      cl21455
      Location:121 → 195
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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