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    LUP5 Terpenoid cyclases family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843014, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LUP5
    Official Full Name
    Terpenoid cyclases family protein
    Primary source
    TAIR:AT1G66960
    Locus tag
    AT1G66960
    See related
    Araport:AT1G66960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O19.4; F1O19_4
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    Genomic context

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    See LUP5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (24984878..24992043, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene kinase-like protein Neighboring gene pleiotropic drug resistance 11 Neighboring gene SHV3-like 2 Neighboring gene suppressor of npr1-1 constitutive 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334259.1
    NM_001334260.1
    NM_001334261.1
    NM_105367.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in triterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Terpenoid cyclases family protein
    NP_176868.1
    • Terpenoid cyclases family protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase 2 (TAIR:AT1G78960.1); Has 2121 Blast hits to 1981 proteins in 568 species: Archae - 2; Bacteria - 916; Metazoa - 134; Fungi - 247; Plants - 610; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24984878..24992043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105367.3 → NP_176868.1  Terpenoid cyclases family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176868.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZI2
      UniProtKB/TrEMBL
      A0A178W656, A0A5S9WQG5
      Conserved Domains (2) summary
      PLN02993
      Location:1 → 763
      PLN02993; lupeol synthase
      cd02892
      Location:99 → 752
      SQCY_1; Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization ...

    2. NM_001334259.1 → NP_001323106.1  Terpenoid cyclases family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W656, A0A1P8AW29, A0A5S9WQG5

    3. NM_001334260.1 → NP_001323105.1  Terpenoid cyclases family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZI2
      UniProtKB/TrEMBL
      A0A178W656, A0A5S9WQG5

    4. NM_001334261.1 → NP_001323107.1  Terpenoid cyclases family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZI2
      UniProtKB/TrEMBL
      A0A178W656, A0A5S9WQG5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZI2.1

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