Beige/BEACH and WD40 domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Beige/BEACH and WD40 domain-containing protein
Primary source: TAIR:AT4G02660
Locus tag: AT4G02660
See related: Araport:AT4G02660
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T10P11.5; T10P11_5
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 20

Sequence:: Chromosome: 4; NC_003075.7 (1159494..1174321, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001340392.1

Supported by ESTs:

NM_116500.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Beige/BEACH and WD40 domain-containing protein

NP_001319850.1

Beige/BEACH domain; WD domain, G-beta repeat protein; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain; WD domain, G-beta repeat protein (TAIR:AT1G03060.1); Has 7684 Blast hits to 5756 proteins in 390 species: Archae - 8; Bacteria - 1306; Metazoa - 3489; Fungi - 1068; Plants - 719; Viruses - 0; Other Eukaryotes - 1094 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

1159494..1174321 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001340393.1 → NP_001329387.1 Beige/BEACH and WD40 domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UUC8, A0A1P8B7J3
NM_001340392.1 → NP_001319850.1 Beige/BEACH and WD40 domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JHT3, Q9ZQX5

UniProtKB/TrEMBL

A0A654FLL5
NM_116500.3 → NP_192175.3 Beige/BEACH and WD40 domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_192175.3

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JHT3, Q9ZQX5

UniProtKB/TrEMBL

A0A654FLL5

Conserved Domains (6) summary

COG2319
Location:3251 → 3523

WD40; WD40 repeat [General function prediction only]

cd01201
Location:2707 → 2873

PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins

pfam02138
Location:2909 → 3188

Beach; Beige/BEACH domain

sd00039
Location:3277 → 3322

7WD40; WD40 repeat [structural motif]

cl02567
Location:3248 → 3503

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

cl22861
Location:1145 → 1254

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...