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    Calcium-binding EF hand family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828892, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding EF hand family protein
    Primary source
    TAIR:AT4G27790
    Locus tag
    AT4G27790
    See related
    Araport:AT4G27790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27E11.30; T27E11_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (13849949..13851973)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene acyl-CoA binding protein 2 Neighboring gene thylakoid-associated phosphatase 38 Neighboring gene uncharacterized protein Neighboring gene beta glucosidase 9 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341883.1
    NM_118917.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-binding EF hand family protein
    NP_194508.1
    • Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT5G08580.1); Has 4096 Blast hits to 3931 proteins in 669 species: Archae - 0; Bacteria - 5; Metazoa - 1396; Fungi - 738; Plants - 1509; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13849949..13851973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118917.3 → NP_194508.1  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUD6, A0A7G2F146, Q9STP7
      Conserved Domains (2) summary
      cd15899
      Location:95 → 125
      EFh_CREC; EF-hand motif [structural motif]
      cl25354
      Location:95 → 325
      EFh_CREC; EF-hand, calcium binding motif, found in CREC-EF hand family

    2. NM_001341883.1 → NP_001329540.1  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B806, A0A7G2F146
    Nucleotide Protein
    Heading Accession and Version

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