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    Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829079, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cytidine/deoxycytidylate deaminase family protein
    Primary source
    TAIR:AT4G29580
    Locus tag
    AT4G29580
    See related
    Araport:AT4G29580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L4.90; T16L4_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (14510147..14512488)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fanconi anemia group E protein FANCE protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytidine deamination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cytidine/deoxycytidylate deaminase family protein
    NP_001154274.1
    • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1366 Blast hits to 1366 proteins in 563 species: Archae - 0; Bacteria - 1122; Metazoa - 6; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
    NP_194687.1
    • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1350 Blast hits to 1350 proteins in 560 species: Archae - 0; Bacteria - 1116; Metazoa - 6; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14510147..14512488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160802.2 → NP_001154274.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154274.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JNN8
      Conserved Domains (4) summary
      cd01283
      Location:38 → 136
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      TIGR01355
      Location:7 → 297
      cyt_deam_dimer; cytidine deaminase, homodimeric
      pfam08211
      Location:140 → 279
      dCMP_cyt_deam_2; Cytidine and deoxycytidylate deaminase zinc-binding region
      cl19902
      Location:376 → 427
      DUF626; Protein of unknown function (DUF626)

    2. NM_119103.1 → NP_194687.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194687.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S789, Q9XHQ7
      UniProtKB/TrEMBL
      A0A178UVG1, A0A5S9XX02
      Conserved Domains (1) summary
      PLN02402
      Location:27 → 297
      PLN02402; cytidine deaminase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S789.1

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