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    GGR geranylgeranyl reductase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830002, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GGR
    Official Full Name
    geranylgeranyl reductase
    Primary source
    TAIR:AT4G38460
    Locus tag
    AT4G38460
    See related
    Araport:AT4G38460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSSU; geranylgeranyl reductase; small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase; SSU
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    Genomic context

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    See GGR in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (17994739..17996222)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene rho guanyl-nucleotide exchange factor 1 Neighboring gene RPAP1-like, carboxy-terminal protein Neighboring gene ncRNA Neighboring gene ACT-like protein tyrosine kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heteromeric Geranyl(geranyl) Diphosphate Synthase Is Involved in Monoterpene Biosynthesis in Arabidopsis Flowers. Chen Q, et al. Mol Plant, 2015 Sep. PMID 25958235
    2. Functional analysis of light-harvesting-like protein 3 (LIL3) and its light-harvesting chlorophyll-binding motif in Arabidopsis. Takahashi K, et al. J Biol Chem, 2014 Jan 10. PMID 24275650, Free PMC Article
    3. Heterodimeric geranyl(geranyl)diphosphate synthase from hop (Humulus lupulus) and the evolution of monoterpene biosynthesis. Wang G, et al. Proc Natl Acad Sci U S A, 2009 Jun 16. PMID 19482937, Free PMC Article
    4. LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis. Tanaka R, et al. Proc Natl Acad Sci U S A, 2010 Sep 21. PMID 20823244, Free PMC Article
    5. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120007.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    contributes_to dimethylallyltranstransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT enables farnesyltranstransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoterpene biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl reductase
    NP_195558.1
    • geranylgeranyl reductase (GGR); INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 1 (TAIR:AT4G36810.1); Has 14555 Blast hits to 14554 proteins in 2890 species: Archae - 343; Bacteria - 9127; Metazoa - 134; Fungi - 165; Plants - 435; Viruses - 12; Other Eukaryotes - 4339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17994739..17996222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120007.4 → NP_195558.1  geranylgeranyl reductase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195558.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39108, Q9FPK0, Q9SZM6
      UniProtKB/TrEMBL
      A0A178V3P7, A0A5S9XZS0, A0A654FWN7
      Conserved Domains (1) summary
      COG0142
      Location:55 → 263
      IspA; Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39108.2

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