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    SETH2 UDP-Glycosyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823646, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SETH2
    Official Full Name
    UDP-Glycosyltransferase superfamily protein
    Primary source
    TAIR:AT3G45100
    Locus tag
    AT3G45100
    See related
    Araport:AT3G45100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.
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    Genomic context

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    See SETH2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (16504314..16507415)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Lalanne E, et al. Plant Cell, 2004 Jan. PMID 14671020, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114379.3
    NM_180327.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables phosphatidylinositol N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UDP-Glycosyltransferase superfamily protein
    NP_566874.1
    • SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G73160.1); Has 19927 Blast hits to 19902 proteins in 2481 species: Archae - 910; Bacteria - 15350; Metazoa - 164; Fungi - 171; Plants - 192; Viruses - 0; Other Eukaryotes - 3140 (source: NCBI BLink).
    NP_850658.1
    • SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G73160.1); Has 19927 Blast hits to 19902 proteins in 2481 species: Archae - 910; Bacteria - 15350; Metazoa - 164; Fungi - 171; Plants - 192; Viruses - 0; Other Eukaryotes - 3140 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16504314..16507415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339193.1 → NP_001326667.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BX4, Q9M1U9
      UniProtKB/TrEMBL
      A0A178VAH7, A0A7G2EUR9
      Conserved Domains (1) summary
      cd03796
      Location:8 → 403
      GT4_PIG-A-like; phosphatidylinositol N-acetylglucosaminyltransferase subunit A and similar proteins

    2. NM_114379.3 → NP_566874.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566874.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BX4, Q9M1U9
      UniProtKB/TrEMBL
      A0A178VAH7, A0A7G2EUR9
      Conserved Domains (1) summary
      cd03796
      Location:8 → 403
      GT4_PIG-A-like; phosphatidylinositol N-acetylglucosaminyltransferase subunit A and similar proteins

    3. NM_180327.2 → NP_850658.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850658.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BX4, Q9M1U9
      UniProtKB/TrEMBL
      A0A178VAH7, A0A7G2EUR9
      Conserved Domains (1) summary
      cd03796
      Location:8 → 403
      GT4_PIG-A-like; phosphatidylinositol N-acetylglucosaminyltransferase subunit A and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94BX4.1

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