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    TBL36 TRICHOME BIREFRINGENCE-LIKE 36 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824593, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL36
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 36
    Primary source
    TAIR:AT3G54260
    Locus tag
    AT3G54260
    See related
    Araport:AT3G54260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TRICHOME BIREFRINGENCE-LIKE 36
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL36 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20084971..20086967, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene suppressor of abi3-5 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene GHMP kinase family protein Neighboring gene sucrose-6F-phosphate phosphohydrolase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115286.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 36
    NP_566996.1
    • TRICHOME BIREFRINGENCE-LIKE 36 (TBL36); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1361 Blast hits to 1313 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20084971..20086967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115286.3 → NP_566996.1  TRICHOME BIREFRINGENCE-LIKE 36 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566996.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940H3, Q9M380
      UniProtKB/TrEMBL
      A0A178VEI4
      Conserved Domains (2) summary
      pfam13839
      Location:102 → 375
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:51 → 101
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q940H3.1

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