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    5'-AMP-activated protein kinase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831846, updated on 18-Sep-2024

    Summary

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    Official Full Name
    5'-AMP-activated protein kinase-like protein
    Primary source
    TAIR:AT5G03420
    Locus tag
    AT5G03420
    See related
    Araport:AT5G03420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12E4.170; F12E4_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (845601..848914)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene Transcription factor DP Neighboring gene ncRNA Neighboring gene phosphoadenosine phosphosulfate (PAPS) reductase family protein Neighboring gene ncRNA Neighboring gene Ca2+dependent plant phosphoribosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves. Seung D, et al. Plant Cell, 2017 Jul. PMID 28684429, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At5g03420 role in starch granule initiation in the leaves
      Title: Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120421.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of starch biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in starch biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    5'-AMP-activated protein kinase-like protein
    NP_195962.2
    • 5'-AMP-activated protein kinase-related; BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      845601..848914
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120421.3 → NP_195962.2  5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195962.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KFB3, Q9LZE6
      UniProtKB/TrEMBL
      A0A178UQ53
      Conserved Domains (2) summary
      cd02859
      Location:512 → 595
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      cl25732
      Location:437 → 516
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KFB3.1

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