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    AGP6 arabinogalactan protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831289, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP6
    Official Full Name
    arabinogalactan protein 6
    Primary source
    TAIR:AT5G14380
    Locus tag
    AT5G14380
    See related
    Araport:AT5G14380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 6; F18O22.170; F18O22_170
    Summary
    Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.
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    Genomic context

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    See AGP6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (4635644..4636676, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like superfamily protein Neighboring gene CCT motif family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene cytochrome P450, family 724, subfamily A, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis AT-hook protein TEK positively regulates the expression of arabinogalactan proteins in controlling nexine layer formation in the pollen wall. Jia QS, et al. Mol Plant, 2014 Oct 20. PMID 25336567
    2. Expression-based and co-localization detection of arabinogalactan protein 6 and arabinogalactan protein 11 interactors in Arabidopsis pollen and pollen tubes. Costa M, et al. BMC Plant Biol, 2013 Jan 8. PMID 23297674, Free PMC Article
    3. Early germination of Arabidopsis pollen in a double null mutant for the arabinogalactan protein genes AGP6 and AGP11. Coimbra S, et al. Sex Plant Reprod, 2010 Sep. PMID 20162305
    4. Pollen grain development is compromised in Arabidopsis agp6 agp11 null mutants. Coimbra S, et al. J Exp Bot, 2009. PMID 19433479, Free PMC Article
    5. Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis. Levitin B, et al. Plant J, 2008 Nov. PMID 18644001

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The data presented suggest the involvement of AGP6 and AGP11 in multiple signaling pathways, in particular those involved in developmental processes such as endocytosis-mediated plasma membrane remodeling during Arabidopsis pollen development.
      Title: Expression-based and co-localization detection of arabinogalactan protein 6 and arabinogalactan protein 11 interactors in Arabidopsis pollen and pollen tubes.
    2. Pollen of agp6 agp11 double null mutant displayed reduced germination and elongation.
      Title: Early germination of Arabidopsis pollen in a double null mutant for the arabinogalactan protein genes AGP6 and AGP11.
    3. Agp6 and Agp11 have overlapping and important functions in gametophytic pollen grain development.
      Title: Pollen grain development is compromised in Arabidopsis agp6 agp11 null mutants.
    4. Loss of function in AGP6 and AGP11 leads to reduced fertility, inhibition of pollen tube growth and inhibition of pollen release from stamens.
      Title: Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121442.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen wall assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 6
    NP_196942.1
    • arabinogalactan protein 6 (AGP6); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 11 (TAIR:AT3G01700.1); Has 37567 Blast hits to 16356 proteins in 1290 species: Archae - 94; Bacteria - 9504; Metazoa - 8118; Fungi - 4708; Plants - 3313; Viruses - 1498; Other Eukaryotes - 10332 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4635644..4636676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121442.3 → NP_196942.1  arabinogalactan protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196942.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LY91, Q9XFR4
      UniProtKB/TrEMBL
      A0A5S9Y415, A0A654G105
      Conserved Domains (1) summary
      PRK07764
      Location:16 → 126
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LY91.1

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