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    myb-like transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834786, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb-like transcription factor family protein
    Primary source
    TAIR:AT5G47390
    Locus tag
    AT5G47390
    See related
    Araport:AT5G47390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    KUA1; KUODA1 (Chinese for enlarge or expand); MQL5.25; MQL5_25; MYB hypocotyl elongation-related; MYBH
    Summary
    Encodes a circadian-regulated transcription factor which specifically controls cell expansion during leaf development by controlling ROS homeostasis.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (19226769..19228895)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene electron transporter, putative (Protein of unknown function, DUF547) Neighboring gene ncRNA Neighboring gene sphingomyelin phosphodiesterase Neighboring gene Tryptophan RNA-binding attenuator protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis. Huang CK, et al. Plant Mol Biol, 2015 Jun. PMID 25920996
    2. Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development. Lu D, et al. Nat Commun, 2014 May 7. PMID 24806884, Free PMC Article
    3. A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation. Kwon Y, et al. J Exp Bot, 2013 Sep. PMID 23888064, Free PMC Article
    4. A novel group of transcriptional repressors in Arabidopsis. Ikeda M, et al. Plant Cell Physiol, 2009 May. PMID 19324928
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. KUA1 modulates leaf cell expansion and final organ size by controlling reactive oxygen species homeostasis. [KUA1]
      Title: Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.
    2. results suggest that the role of MYBH in controlling auxin homeostasis accounts for its capacity to participate in regulation of age- and darkness-induced leaf senescence in Arabidopsis
      Title: A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.
    3. These results indicate that MYBH is one of the molecular components that regulate hypocotyl elongation in response to darkness.
      Title: A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124110.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular auxin homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in post-embryonic plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of reactive oxygen species metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to ethylene IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb-like transcription factor family protein
    NP_199550.1
    • myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G16350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19226769..19228895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124110.4 → NP_199550.1  myb-like transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199550.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVS0
      UniProtKB/TrEMBL
      A0A5S9YE51, A0A654G941
      Conserved Domains (1) summary
      TIGR01557
      Location:93 → 145
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVS0.1

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