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    SABRE-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835031, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SABRE-like protein
    Primary source
    TAIR:AT5G49680
    Locus tag
    AT5G49680
    See related
    Araport:AT5G49680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    23
    Sequence:
    Chromosome: 5; NC_003076.8 (20176080..20188567)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase family protein Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene miscRNA Neighboring gene Putative AT-hook DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. KINKY POLLEN encodes a SABRE-like protein required for tip growth in Arabidopsis and conserved among eukaryotes. Procissi A, et al. Plant J, 2003 Dec. PMID 14675453
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001085269.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root hair cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in pollen tube tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in root hair tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SABRE-like protein
    NP_001078738.1
    • Golgi-body localisation protein domain; RNA pol II promoter Fmp27 protein domain; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain; RNA pol II promoter Fmp27 protein domain (TAIR:AT1G58250.1); Has 241 Blast hits to 185 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 36; Plants - 79; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20176080..20188567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085269.2 → NP_001078738.1  SABRE-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078738.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6IMT0, Q9LTA4, Q9LTA5
      UniProtKB/TrEMBL
      A0A178UE23, A0A5S9YET5, A0A654G9I7
      Conserved Domains (2) summary
      pfam10347
      Location:1206 → 1301
      Fmp27_GFWDK; RNA pol II promoter Fmp27 protein domain
      pfam10351
      Location:1917 → 2426
      Apt1; Golgi-body localization protein domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IMT0.1

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