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    TRY Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835401, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRY
    Official Full Name
    Homeodomain-like superfamily protein
    Primary source
    TAIR:AT5G53200
    Locus tag
    AT5G53200
    See related
    Araport:AT5G53200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFH8.14; MFH8_14; TRIPTYCHON
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    Genomic context

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    See TRY in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (21582614..21584243)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene polypyrimidine tract-binding protein 2 Neighboring gene Nodulin MtN3 family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of TRIPTYCHON in trichome patterning in Arabidopsis. Pesch M, et al. BMC Plant Biol, 2011 Sep 27. PMID 21951724, Free PMC Article
    2. Amino acid substitutions in CPC-LIKE MYB reveal residues important for protein stability in Arabidopsis roots. Yamada K, et al. PLoS One, 2018. PMID 30308079, Free PMC Article
    3. Cytotoxic and enterotoxic activities of Campylobacter jejuni are not specified by tetracycline resistance plasmids pMAK175 and pUA466. Taylor DE, et al. J Clin Microbiol, 1987 Jan. PMID 3793867, Free PMC Article
    4. Function of the TRY C-terminal region artificially fused with its homologous transcription factors inducing root hair differentiation in Arabidopsis. Wakamatsu J, et al. Biosci Biotechnol Biochem, 2021 Apr 24. PMID 33765114
    5. TRIPTYCHON and CAPRICE mediate lateral inhibition during trichome and root hair patterning in Arabidopsis. Schellmann S, et al. EMBO J, 2002 Oct 1. PMID 12356720, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Function of the TRY C-terminal region artificially fused with its homologous transcription factors inducing root hair differentiation in Arabidopsis.
      Title: Function of the TRY C-terminal region artificially fused with its homologous transcription factors inducing root hair differentiation in Arabidopsis.
    2. Study compared the functions of the wild-type TRY and ETC2 proteins and their amino acid-substituted versions. Results showed that the substitution of amino acids in the C-terminal of TRY and ETC2 conferred them the ability to induce root hair formation. Furthermore, results confirmed that these mutations enhanced the stability of the TRY and ETC2 proteins.
      Title: Amino acid substitutions in CPC-LIKE MYB reveal residues important for protein stability in Arabidopsis roots.
    3. NTL8 negatively regulates trichome formation in Arabidopsis by directly activating the expression of TRY and TCL1.
      Title: NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    4. that CPC, TRY and ETC1 are also involved in root hair formation at the root-hypocotyl junction.
      Title: Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    5. In an intricate interplay between three partly redundant single R3 MYB proteins, CPC, ETC1, and TRY regulate several developmental, physiological and metabolic processes that are putatively located in different tissues.
      Title: The paralogous R3 MYB proteins CAPRICE, TRIPTYCHON and ENHANCER OF TRY AND CPC1 play pleiotropic and partly non-redundant roles in the phosphate starvation response of Arabidopsis roots.
    6. TRY, but not the related factor CPC, is responsible for the preferential SCM accumulation.
      Title: TRIPTYCHON, not CAPRICE, participates in feedback regulation of SCM expression in the Arabidopsis root epidermis.
    7. Data show that TRANSPARENT TESTA GLABRA 2 (TTG2) is a specific activator of TRYPTICHON protein (TRY) by binding to W-boxes in a minimal promoter fragment of TRY.
      Title: Arabidopsis TTG2 regulates TRY expression through enhancement of activator complex-triggered activation.
    8. Mutations in CPC or TRY delay flowering of cpl3 plants. A mutation in ETC1 did not further delay flowering but reduced plant size.
      Title: Flowering is delayed by mutations in homologous genes CAPRICE and TRYPTICHON in the early flowering Arabidopsis cpl3 mutant.
    9. AtMYC1 is negative regulator of TRY.
      Title: Mutual control of intracellular localisation of the patterning proteins AtMYC1, GL1 and TRY/CPC in Arabidopsis.
    10. The TRY protein has specific properties relevant for cluster formation and trichome density.
      Title: Role of TRIPTYCHON in trichome patterning in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124699.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of trichome patterning IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within trichome branching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like superfamily protein
    NP_200132.2
    • TRIPTYCHON (TRY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30420.1); Has 2274 Blast hits to 2274 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2256; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21582614..21584243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124699.3 → NP_200132.2  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200132.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GV05, Q9FGL7
      UniProtKB/TrEMBL
      A0A178UFU9, A0A5S9YE48, A0A8A9WR90
      Conserved Domains (1) summary
      PLN03212
      Location:33 → 71
      PLN03212; Transcription repressor MYB5; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GV05.1

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