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    Cytochrome c oxidase subunit Vc family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836252, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cytochrome c oxidase subunit Vc family protein
    Primary source
    TAIR:AT5G61310
    Locus tag
    AT5G61310
    See related
    Araport:AT5G61310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFB13.16; MFB13_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (24653261..24654940, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Remorin family protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene uncharacterized protein Neighboring gene cytochrome P450, family 89, subfamily A, polypeptide 3 Neighboring gene rRNA processing protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The intron of the Arabidopsis thaliana COX5c gene is able to improve the drought tolerance conferred by the sunflower Hahb-4 transcription factor. Cabello JV, et al. Planta, 2007 Oct. PMID 17569080
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. enhanced stress tolerance seemed to be due to a combination of an increase in transcription and translation rates in comparison to those of COX5C plants transformed with the Hahb-4 promoter
      Title: The intron of the Arabidopsis thaliana COX5c gene is able to improve the drought tolerance conferred by the sunflower Hahb-4 transcription factor.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001037041.2
    NM_001125999.1
    NM_001345467.1
    NM_001345469.1
    NM_180908.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    part_of respiratory chain complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cytochrome c oxidase subunit Vc family protein
    NP_001032118.1
    • Cytochrome c oxidase subunit Vc family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase subunit Vc family protein (TAIR:AT2G47380.1); Has 93 Blast hits to 93 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001119471.1
    • Cytochrome c oxidase subunit Vc family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase subunit Vc family protein (TAIR:AT2G47380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318855.1
    • Cytochrome c oxidase subunit Vc family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase subunit Vc family protein (TAIR:AT2G47380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851239.1
    • Cytochrome c oxidase subunit Vc family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase subunit Vc family protein (TAIR:AT2G47380.1); Has 93 Blast hits to 93 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24653261..24654940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345468.1 → NP_001330747.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    2. NM_001345467.1 → NP_001318855.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    3. NM_180908.2 → NP_851239.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851239.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    4. NM_001037041.2 → NP_001032118.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032118.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    5. NM_001345469.1 → NP_001330748.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    6. NM_001125999.1 → NP_001119471.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119471.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLK2
      UniProtKB/TrEMBL
      A0A178UCG7, A0A384KTY6, Q2HIR0
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLK2.1

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