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    Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833501, updated on 18-Sep-2024

    Summary

    Official Full Name
    Pseudouridine synthase family protein
    Primary source
    TAIR:AT5G35400
    Locus tag
    AT5G35400
    See related
    Araport:AT5G35400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26D22.10; T26D22_10
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (13599220..13602355, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene ncRNA

    General gene information

    NM_001203494.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    Pseudouridine synthase family protein
    NP_001190423.1
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G20370.1).
    NP_198390.2
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 7309 Blast hits to 7255 proteins in 2416 species: Archae - 105; Bacteria - 5162; Metazoa - 124; Fungi - 79; Plants - 176; Viruses - 0; Other Eukaryotes - 1663 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      13599220..13602355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122931.3NP_198390.2  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198390.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKP7, A0A5S9Y9D5, Q8GUL5
      Conserved Domains (1) summary
      cl00130
      Location:97409
      PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
    2. NM_001203494.1NP_001190423.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190423.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKP7, A0A5S9Y9D5, F4JZU2
      Conserved Domains (2) summary
      PRK00021
      Location:94460
      truA; tRNA pseudouridine synthase A; Validated
      cl00130
      Location:97460
      PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
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