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    auxin canalization protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    auxin canalization protein (DUF828)
    Primary source
    TAIR:AT4G16670
    Locus tag
    AT4G16670
    See related
    Araport:AT4G16670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4360W; FCAALL.2
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (9385119..9387754)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase family protein Neighboring gene heat shock protein 70 (Hsp 70) family protein Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene methyl esterase 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BPL3 binds the long non-coding RNA nalncFL7 to suppress FORKED-LIKE7 and modulate HAI1-mediated MPK3/6 dephosphorylation in plant immunity. Ai G, et al. Plant Cell, 2023 Jan 2. PMID 36269178, Free PMC Article
    2. Members of the Arabidopsis FORKED1-LIKE gene family act to localize PIN1 in developing veins. Prabhakaran Mariyamma N, et al. J Exp Bot, 2018 Sep 14. PMID 29982821, Free PMC Article
    3. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    4. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    5. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117768.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within post-Golgi vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin canalization protein (DUF828)
    NP_193400.2
    • CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT4G17350.1); Has 215 Blast hits to 188 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 208; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9385119..9387754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341124.1 → NP_001328699.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWP3, A0A1P8B5G5

    2. NM_001341125.1 → NP_001328698.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWP3, A0A1P8B5F2

    3. NM_117768.4 → NP_193400.2  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193400.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWP3, Q5HZ31, Q84WF2
      Conserved Domains (2) summary
      pfam05703
      Location:62 → 274
      Auxin_canalis; Auxin canalization
      pfam08458
      Location:307 → 412
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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