IBR10 indole-3-butyric acid response 10 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: IBR10
Official Full Name: indole-3-butyric acid response 10
Primary source: TAIR:AT4G14430
Locus tag: AT4G14430
See related: Araport:AT4G14430
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS THALIANA DELTA(3); ATECI2; DELTA(2)-ENOYL COA ISOMERASE 2; DELTA(3); DL3255C; ECHIB; ECI2; ENOYL-COA HYDRATASE/ISOMERASE B; FCAALL.43; indole-3-butyric acid response 10; PEC12
Summary: Encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation. This enzyme might also be involved in the conversion of indole-3-butyric acid to indole-3-acetic acid via a beta-oxidation-like pathway.
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Genomic context

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See IBR10 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (8304442..8305857, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Delta(3),Delta(2)-enoyl CoA isomerase is invloved in degradation of unsaturated fatty acids. Of the three ECI genes in plants, AtECI2 and AtECI3 are tandem duplicats; AtECI1 or AtECI2 were targeted to peroxisomes but AtECI3 remained in the cytosol. [ECI2]
Title: Peroxisomal Delta(3),Delta(2)-enoyl CoA isomerases and evolution of cytosolic paralogues in embryophytes.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_117522.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables delta(3)-delta(2)-enoyl-CoA isomerase activity	IDA Inferred from Direct Assay more info	PubMed
enables delta(3)-delta(2)-enoyl-CoA isomerase activity	IGI Inferred from Genetic Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in fatty acid beta-oxidation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within fatty acid catabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within indolebutyric acid metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to indolebutyric acid	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within root hair elongation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in peroxisome	HDA more info	PubMed

General protein information

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Preferred Names: indole-3-butyric acid response 10

NP_193179.1

indole-3-butyric acid response 10 (IBR10); FUNCTIONS IN: catalytic activity, dodecenoyl-CoA delta-isomerase activity; INVOLVED IN: fatty acid catabolic process, root hair elongation, metabolic process, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyacyl-CoA dehydratase 1 (TAIR:AT4G14440.1); Has 14072 Blast hits to 14069 proteins in 1567 species: Archae - 245; Bacteria - 9896; Metazoa - 835; Fungi - 284; Plants - 269; Viruses - 0; Other Eukaryotes - 2543 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

8304442..8305857 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117522.3 → NP_193179.1 indole-3-butyric acid response 10 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_193179.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O23299, Q8LC07

UniProtKB/TrEMBL

A0A178UV55, A0A5S9XSI6, A0A7G2EXY8

Conserved Domains (1) summary

PLN02267
Location:1 → 240

PLN02267; enoyl-CoA hydratase/isomerase family protein