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    LINC01532 long intergenic non-protein coding RNA 1532 [ Homo sapiens (human) ]

    Gene ID: 100505835, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01532provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1532provided by HGNC
    Primary source
    HGNC:HGNC:51272
    See related
    AllianceGenome:HGNC:51272
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01532 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (29002555..29013955)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (31532482..31544680)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (29493462..29504862)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724958 Neighboring gene long intergenic non-protein coding RNA 906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29474323-29474824 Neighboring gene RNA, 5S ribosomal pseudogene 470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29510025-29510526 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29538773-29539274 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:29552893-29553394 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:29553395-29553894 Neighboring gene uncharacterized LOC124904682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29577209-29577710 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:29635999-29636174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14405 Neighboring gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • CTD-2081K17.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040036.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011505, AK055100, BC039394

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      29002555..29013955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      31532482..31544680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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